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Phylogenetic Analysis

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Molecular Evolution (18) Taxonomy Software (42)

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ClustalW - http://www.ebi.ac.uk/clustalw/ EBI server for multiple sequence alignment on the web

GRIMM/MGR - http://nbcr.sdsc.edu/GRIMM/mgr.cgi A tool for constructing phylogenies based on gene order for unichromosomal and multichromosomal genomes

http://www.cbrg.ethz.ch/services/TreeGen - http://www.cbrg.ethz.ch/services/TreeGen Tree generation from distance data. [Results by email]

http://www.genebee.msu.su/services/phtree_reduced.html - http://www.genebee.msu.su/services/phtree_reduced.html Multiple sequence alignment based phylogenetic tree prediction program.

MultAlign - http://bioinfo.genopole-toulouse.prd.fr/multalin/multalin.html A multiple-sequence alignment program that also includes distance matrix methods for inferring trees.

Phylogeny at Pasteur - http://bioweb.pasteur.fr/seqanal/phylogeny/intro-uk.html A collection of phylogenetics programs available at Pasteur Institute. Includes a number of Phylip programs.

SplitsTree 2 - http://bibiserv.techfak.uni-bielefeld.de/splits/ Tool that uses split decomposition method to analyze and visualize distance data from biological sequences.

Vista tools - http://gsd.lbl.gov/vista/index.shtml Multiple sequence alignment server and whole genome alignment database.

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